PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02337.40

Common Name

JCGZ_15063, LOC105644754

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 211aa MW: 23802 Da PI: 4.9013

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02337.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68	9e-22	20	68	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ksn qvtfskRr+g+ KKA+ELS LC+a+va+i fs+ k++ + Jcr4S02337.40 20 KPIERKSNLQVTFSKRRAGLVKKASELSLLCGAQVALIAFSPGKKVFAF 68 68****************************************9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.4E-29	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.273	12	72	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.04E-34	13	82	No hit	No description
SuperFamily	SSF55455	6.67E-27	13	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-22	22	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.2E-20	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MVNTKTNQKR TKGRQKIEIK PIERKSNLQV TFSKRRAGLV KKASELSLLC GAQVALIAFS 60 PGKKVFAFGN PNVDVVLDRY LNEGTFASNE DEPTTLNIDD VNMKNPNVPK WNKEYEEAVK 120 ELEEETKCLA KIEEWNKVRE NMNAGFWWDE PIDNMGVEEL EEYVCALKVL KGNVGIRVNE 180 LMMMGNQNYN MDGFECNGAS NGGFGFGDGS Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-15	13	80	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-15	13	80	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-15	13	80	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-15	13	80	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_B	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_I	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3kov_J	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_A	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_B	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_C	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_D	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_I	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
3p57_J	2e-15	13	80	1	68	Myocyte-specific enhancer factor 2A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085609.1	1e-154	agamous-like MADS-box protein AGL62
TrEMBL	A0A067LDC3	1e-152	A0A067LDC3_JATCU; Uncharacterized protein
STRING	XP_002532452.1	1e-96	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-36	AGAMOUS-like 62

Link Out ? help Back to Top
Entrez Gene	105644754

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]