PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02327.30 | ||||||||
Common Name | JCGZ_15604, LOC105630439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ZF-HD | ||||||||
Protein Properties | Length: 283aa MW: 31053.7 Da PI: 7.865 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103 | 1.9e-32 | 46 | 102 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 + v YkeClkNhAa+lGg a+DGCgEfmps++++ +++++lkC ACgCHRnFHRr++ Jcr4S02327.30 46 TVVSYKECLKNHAATLGGLALDGCGEFMPSPSASlSDPTSLKCVACGCHRNFHRRDS 102 5789*****************************99********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-21 | 48 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-26 | 48 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.6E-29 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.503 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.58E-15 | 169 | 244 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 171 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-26 | 182 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDLTTRNPQT KTPDSDTDTE TPLQTHLSRA LSLTNGSPSF HPPPQTVVSY KECLKNHAAT 60 LGGLALDGCG EFMPSPSASL SDPTSLKCVA CGCHRNFHRR DSLQPPPVVA FHWSTSSPSP 120 GQTSSGPSHS DPNSPASPIP QQSVYPSAPH MLLALSTGHS GPFEENHHHQ MNHPTVMNPH 180 GKKGARTKFT EEQKEKMHLF AEKLGWKMMR ANDEKIVEEF CSEVGVKRNV FKVWMHNNKH 240 RKEKGGCDIN KKIVNFNCDS NYGSYQIESK IASLDDGSSP SSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-18 | 186 | 246 | 21 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067639.1 | 0.0 | zinc-finger homeodomain protein 11 | ||||
Swissprot | Q9SEZ1 | 8e-58 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A067KYG4 | 0.0 | A0A067KYG4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_012790m | 1e-128 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 3e-56 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105630439 |
Publications ? help Back to Top | |||
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