PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02320.20

Common Name

JCGZ_17350, LOC105639196

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 171aa MW: 19012.5 Da PI: 6.6538

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02320.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.8e-43	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA arardPvyG+vg i+ lq+q+++l+ +l++ Jcr4S02320.20 8 PCASCKLLRRRCAKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQEIPVDQRADAVSSLVYEASARARDPVYGCVGAISYLQNQVSELQMQLSV 103 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e Jcr4S02320.20 104 AQAE 107 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.606	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MAGSSSPPCA SCKLLRRRCA KDCIFAPYFP SHDPHKFAIV HKVFGASNVS KMLQEIPVDQ 60 RADAVSSLVY EASARARDPV YGCVGAISYL QNQVSELQMQ LSVAQAELFC IQMQQQEPVI 120 FPNQDQDHEV KSSLDLATNN SSGNQIPHYY NFTSSSNVTI QDPLKRESLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	4	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	4	109	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078565.1	1e-126	LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A067LEW4	1e-125	A0A067LEW4_JATCU; Uncharacterized protein
STRING	VIT_06s0004g07200.t01	6e-87	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-74	LBD family protein

Link Out ? help Back to Top
Entrez Gene	105639196

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]