PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02306.50

Common Name

JCGZ_16555, LOC105642266

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 329aa MW: 36224.5 Da PI: 8.0558

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02306.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl Jcr4S02306.50 14 KGPWAPEEDAKLKEYIEKHGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ Jcr4S02306.50 69 GDFSDDEDRIICTLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.95	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.37E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	2.72E-8	16	62	No hit	No description
PROSITE profile	PS51294	21.746	63	117	IPR017930	Myb domain
SMART	SM00717	6.6E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-10	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-23	70	117	IPR009057	Homeodomain-like
CDD	cd00167	3.84E-7	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWAPE EDAKLKEYIE KHGTGGNWIS LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDDEDRIIC TLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI 120 IIHNHNNHPV SSRKLPHHLI TTTSFSSLLQ PNSSLPSSPS TALSSSSSSS PYTLARSFSS 180 DQPLFPFSSP LGNNNNIPAN MLQTQESLFG GMQNYSQVKE SSLLMFGGEA SCSSSDGSHG 240 GASNNEEMGF QSYLYNGVEE SQKLLLPGGG GGGGGWWEKQ NGLWGGNANT IMDYGLEEIK 300 QLISSGSSSI CNNFLFEENK TEERVMYYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-25	14	117	7	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034715	0.0	KM034715.1 Jatropha curcas clone JcMYB095 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082427.1	0.0	transcription factor RAX2
TrEMBL	A0A067JYX0	0.0	A0A067JYX0_JATCU; MYB family protein
STRING	cassava4.1_012036m	1e-136	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-76	myb domain protein 36

Link Out ? help Back to Top
Entrez Gene	105642266

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]