PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02298.20

Common Name

JCGZ_10487, LOC105636181

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 659aa MW: 75702.3 Da PI: 6.0329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02298.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8.2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yLk+k+++ k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s Jcr4S02298.20 6 LPPGFRFHPTDEELVAYYLKRKINNLKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS 100 79**************************.99***********6434555777********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + vg+kktLv+y+grap+g +tdWvmheyrl Jcr4S02298.20 101 -QMRSVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-63	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	6	156	IPR003441	NAC domain
Pfam	PF02365	9.4E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKINN LKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDERECET PSGLQDAYAL CRVFKKSANI PKIGEHFAST SNHQMASEHS 180 SSIELYSEGR CEDFESSNYH MPIDTSSPSV ANGSPLHVGD SRDGKWKQFL SEDAFSFSSP 240 SFSSYNNVPY PPSKVDIALE CARLQHRFSL PPLEVEDFPQ VGLTDMKVMH STSMHQNTNR 300 TDILQEILSV AHASQELINQ SNLQDSWGGH YSHDTNDFTF VAGNNDVHGN LYADMNSMRC 360 MEKSWGDPNL RSIEIGNFDD DFKTERMSEN LRWVGMSNEE LEKSFAEEHK IVPIENISNF 420 PRREGHELQG ETENREDCMV FNETDDYSLG FINDDPNGNF IDEGNMNALA SSPSFEVVEE 480 IKVNHGMFVS TCQAAETFFH QVVPSQTVKI HLNPEFNDDF SIEKVYMQTP HETRCKNLTR 540 QNNFMGISYR SIQYNWKKLA RNVVCMIMVL LMHCFYVGNE KVMNGFMESG FGGEKDYPSN 600 IKNKEILERT KWSENKEKDL LVIIRGRNKL SVFLKKLGLF LTISLALCTM WVNHLMLTS

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKINN LKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET PSGLQDAYAL CRVFKKSANI PKIGEHFAST SNHQMASEHS  180
SSIELYSEGR CEDFESSNYH MPIDTSSPSV ANGSPLHVGD SRDGKWKQFL SEDAFSFSSP  240
SFSSYNNVPY PPSKVDIALE CARLQHRFSL PPLEVEDFPQ VGLTDMKVMH STSMHQNTNR  300
TDILQEILSV AHASQELINQ SNLQDSWGGH YSHDTNDFTF VAGNNDVHGN LYADMNSMRC  360
MEKSWGDPNL RSIEIGNFDD DFKTERMSEN LRWVGMSNEE LEKSFAEEHK IVPIENISNF  420
PRREGHELQG ETENREDCMV FNETDDYSLG FINDDPNGNF IDEGNMNALA SSPSFEVVEE  480
IKVNHGMFVS TCQAAETFFH QVVPSQTVKI HLNPEFNDDF SIEKVYMQTP HETRCKNLTR  540
QNNFMGISYR SIQYNWKKLA RNVVCMIMVL LMHCFYVGNE KVMNGFMESG FGGEKDYPSN  600
IKNKEILERT KWSENKEKDL LVIIRGRNKL SVFLKKLGLF LTISLALCTM WVNHLMLTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	7e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	7e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	7e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	7e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	7e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	7e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	7e-57	1	162	15	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775325	0.0	KC775325.1 Jatropha curcas NAC transcription factor 047 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074769.1	0.0	NAC domain-containing protein 86
TrEMBL	R4N7Q4	0.0	R4N7Q4_JATCU; NAC transcription factor 047
STRING	XP_002526579.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-165	NAC domain containing protein 28

Link Out ? help Back to Top
Entrez Gene	105636181

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]