PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02252.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 732aa    MW: 82876.4 Da    PI: 6.3775
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02252.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.63.8e-31103206199
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k ltpsdv+k++rlv+pk++ae++     +++ +++  l++ede g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F+++++++++
  Jcr4S02252.50 103 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgpDSVDNKGLILSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVLFERHRTDGER 198
                    99****************************977888999*************************************************98889999 PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    ++++++r+
  Jcr4S02252.50 199 FFIGWRRR 206
                    9****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-4097211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-31101206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-26102197No hitNo description
SMARTSM010196.5E-25103207IPR003340B3 DNA binding domain
PfamPF023626.6E-28103206IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93103207IPR003340B3 DNA binding domain
SuperFamilySSF534746.16E-11340464IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18201.0E-14340471IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534743.78E-50475730IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.9E-41490625IPR029058Alpha/Beta hydrolase fold
PfamPF005612.1E-17514619IPR000073Alpha/beta hydrolase fold-1
PRINTSPR004122.4E-14519537IPR000639Epoxide hydrolase-like
PRINTSPR004122.4E-14539554IPR000639Epoxide hydrolase-like
PRINTSPR004122.4E-14599612IPR000639Epoxide hydrolase-like
Gene3DG3DSA:3.40.50.18208.5E-11655730IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MSINHFSQDL PENLWWSQQQ QQNLIMEPNP NSSPSSKPNN PLISTQNSSF PSNLYSFSYN  60
LQRHSHHPMF SPATQNDDEE LQDPEEEQEG GPVLQQIAKE TMFEKPLTPS DVGKLNRLVI  120
PKQHAEKYFP LGPDSVDNKG LILSFEDELG KCWRFRYSYW NSSQSYVLTK GWSRYVKEKQ  180
LDAGDVVLFE RHRTDGERFF IGWRRRGDNS NNNNNSSGGV MVQGSGGVLW SRRLYSSSGH  240
QPYQHGHGAN VTSTVPYQPD CLHAGSSGQN QTTALGNSKR LRLFGVNLEC QLDESEPSTP  300
DGSSSLSSQG LTQQQQQQEE MYSFHSGYSS SSNSCHNHMV VVVAKDFGAR VAYMFALLHP  360
DRVLGIVTVG APFVPPGPAQ FNKYLPEGFY MSKWQEPGRA EADFGRFDAK TVVRNIYILF  420
SKSEIPIADE NQEIMDLVEP STPLPSWSKE EDLAIYGALY EKSGFQTALK VPYSKLYQKL  480
KKCVELDPIL IRHKFVRIRG VKLHIAEIGT GTSVVVFIHG FPEIWYSWRH QMLAVASAGY  540
RAIALDLRGY GLSEHHPEPE KASFDDFVED TIAILDHYQI HKALLIGKDF GSWPIYLLYL  600
LHPTRISGVV SLGVPFFIPN LNGTRTFFLK FSTSQDGRNL EELRLTLADL TGLRVDFTLT  660
DPKIEVPVLL IIGEKDYFLK FPGIKEYLTS GKVKDYVSDF EIKSFPDGTH FIQEQYPDQI  720
NQLIIGFLEK RA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4410020611117DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-60B3 family protein