PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02202.30

Common Name

JCGZ_09823, LOC105635724

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HB-other

Protein Properties

Length: 396aa MW: 43339.7 Da PI: 7.562

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02202.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.5	1.5e-05	25	53	37	55
C..........TS-HHHHHHHHHHHHHHH CS Homeobox 37 l..........gLterqVkvWFqNrRake 55 ++ +qV +WFqNrR+ Jcr4S02202.30 25 FsesterkgkiIVQMKQVWNWFQNRRYAI 53 555555555556789***********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-5	1	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.394	1	56	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-8	8	57	IPR009057	Homeodomain-like
Pfam	PF16719	8.1E-41	113	240	IPR032001	SAWADEE domain
CDD	cd00024	0.00589	127	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MEGILQEHHN SMPAREVLVA LAEKFSESTE RKGKIIVQMK QVWNWFQNRR YAIRAKSSKT 60 PVKLNVTPMS REESTPVRSV PQAVAAPIPA AIPATMALPS VPSAGRTTTE NSYMEFEAKS 120 ARDGAWYDVG TFLSHRHLDT GDPEVLVRFA GFGPDEDEWV NIRKHVRQRS LPCEASECVA 180 VLPGDLILCF QEGKDQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDLS EEIVPLRKVC 240 RRPETDYRLQ QLHAANDSAT TDQQKTNTDP STAFFQRVTL SPAETMQRQR NADVATTGAV 300 SNANISLPIK TIIPEPKSVE TSNTANVGTP SVLPNNTANV GNPSTFPSST VNVGNPSVFP 360 SSAVSSGNPS VLPTAGVLPS NAVNAESSGP AINNVN

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MEGILQEHHN SMPAREVLVA LAEKFSESTE RKGKIIVQMK QVWNWFQNRR YAIRAKSSKT  60
PVKLNVTPMS REESTPVRSV PQAVAAPIPA AIPATMALPS VPSAGRTTTE NSYMEFEAKS  120
ARDGAWYDVG TFLSHRHLDT GDPEVLVRFA GFGPDEDEWV NIRKHVRQRS LPCEASECVA  180
VLPGDLILCF QEGKDQALYF DAHVLDAQRR RHDVRGCRCR FLVRYDHDLS EEIVPLRKVC  240
RRPETDYRLQ QLHAANDSAT TDQQKTNTDP STAFFQRVTL SPAETMQRQR NADVATTGAV  300
SNANISLPIK TIIPEPKSVE TSNTANVGTP SVLPNNTANV GNPSTFPSST VNVGNPSVFP  360
SSAVSSGNPS VLPTAGVLPS NAVNAESSGP AINNVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	9e-47	114	244	4	134	SHH1 SAWADEE
4iur_B	9e-47	114	244	4	134	SHH1 SAWADEE
4iut_A	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	9e-47	114	244	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074200.1	0.0	protein SAWADEE HOMEODOMAIN HOMOLOG 2
Swissprot	Q8RWJ7	1e-134	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A067KMR4	0.0	A0A067KMR4_JATCU; Uncharacterized protein
STRING	cassava4.1_011330m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6816	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-120	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Entrez Gene	105635724

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]