PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02193.30
Common NameJCGZ_24344, LOC105629566
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 309aa    MW: 35269.3 Da    PI: 10.0257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02193.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-172065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v q+G+ +W+ Ia++++ gR++k+c++rw++ 
    Jcr4S02193.30 20 RGHWRPAEDDKLRQLVDQFGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 65
                     899*****************************.************96 PP
2Myb_DNA-binding54.72.2e-1772116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
    Jcr4S02193.30  72 KKPFTEEEEEKLLKAHQIQGNR-WASIARLFP-GRTDNAVKNHFHVV 116
                      689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.531570IPR017930Myb domain
SuperFamilySSF466898.99E-2918113IPR009057Homeodomain-like
SMARTSM007171.4E-141968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-272173IPR009057Homeodomain-like
PfamPF139212.7E-172381No hitNo description
CDDcd001671.95E-132364No hitNo description
PROSITE profilePS5129418.78371121IPR017930Myb domain
SMARTSM007171.3E-1571119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2074119IPR009057Homeodomain-like
CDDcd001679.28E-586117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MENGRENSIS SSDSGKSCHR GHWRPAEDDK LRQLVDQFGP QNWNFIAEHL QGRSGKSCRL  60
RWYNQLDPNI NKKPFTEEEE EKLLKAHQIQ GNRWASIARL FPGRTDNAVK NHFHVVMARR  120
KRQSLSLVYG KRSLQFRSTE STKNSNFEKF FNPQIPGNDF HSKLGFQSKS NSKLLIPSTS  180
SPSWTISAST ITNDSVMSFD FFDGKRMDYK NSSSSSYTQE GSNGFNESIN CHHQRRFGSY  240
EISNSKTVLV PSNIPLSLLS YGSKIKPQLV SDSDTLRKSP MTSEQEEQRD ESIKRKDVPF  300
IDFLGVGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-34201207107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346310.0KM034631.1 Jatropha curcas clone JcMYB010 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066568.10.0transcription factor MYB3R-5
TrEMBLA0A067LDJ60.0A0A067LDJ6_JATCU; MYB family protein
STRINGXP_002526637.11e-121(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-71myb domain protein 69
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]