PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02178.30 | ||||||||
Common Name | JCGZ_01469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 438aa MW: 50051.6 Da PI: 10.1548 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5e-15 | 360 | 435 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p +f+e+h ++ +e++tl++++ +sW vkl + +r ++++GW F+++n L++gD+++F+l+++++ ++v++ Jcr4S02178.30 360 HVPLEFMEAHTKQMKENVTLQVKN---KSWAVKL--LSHADRGFFSAGWFTFARENCLQAGDVCTFELIDSRTMVFKVHIS 435 5899******87777877777666...*******..888888899**********************99644443466665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-10 | 14 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-9 | 14 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.05E-7 | 19 | 72 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-9 | 229 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-8 | 232 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-8 | 235 | 313 | No hit | No description |
SMART | SM01019 | 1.1E-7 | 349 | 438 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-17 | 355 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 360 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-12 | 360 | 435 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 361 | 438 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.74E-15 | 361 | 436 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MASSSSSRKI GHTFEPTKPH FFKVVLGHAI RDKKIDIPMR FAKKYGNYLP SSVVLKVPSG 60 AKWQVQLIKS DGVIXSASEI DYPYIVNGDN ERINNLEEAQ NDFSGQNLED FLPNRKVKEE 120 SPERINNLDR SASEIDYPYI VNGNNERINN LEEAQNDFSG QNLEDFLPNR KVKEESPENP 180 TRPKTCKKRK LENPTRKFEA EKGHGCYSGK NQLLTKIEKA IVLHRARTAF KSENPFFMVA 240 MNPSYVQAGR KVHISAKFAR KYLKEGGDAT VNDMDGRTWC INYQRRENGT SGGLFSATDK 300 FKVVIFRYNK DPSSSYPSPG KKRKLKHKEK ESANRCKKSK GPSIEGENRC TSRNPLFIKH 360 VPLEFMEAHT KQMKENVTLQ VKNKSWAVKL LSHADRGFFS AGWFTFAREN CLQAGDVCTF 420 ELIDSRTMVF KVHISRNF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020539991.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | A0A067LKU5 | 0.0 | A0A067LKU5_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-13 | related to vernalization1 1 |
Publications ? help Back to Top | |||
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