PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02143.10
Common NameJCGZ_04029, LOC105633511, WRKY02
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 386aa    MW: 42084.7 Da    PI: 9.8536
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02143.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.44e-2575131259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +DgynWrKYGqK+vk+ + +rsYY+Ct+++C++kk +e++++ ++v+ei+++g+H h+
  Jcr4S02143.10  75 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKK-IECADHSGHVIEIVNKGTHSHD 131
                    7********************************98.*********************7 PP
2WRKY97.68.4e-31247303359
                    -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  Jcr4S02143.10 247 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNAVIITYKGIHDHD 303
                    9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.4E-1972133IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-1973133IPR003657WRKY domain
SMARTSM007743.7E-2274132IPR003657WRKY domain
PROSITE profilePS5081116.9674133IPR003657WRKY domain
PfamPF031061.3E-1676131IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-31230305IPR003657WRKY domain
PROSITE profilePS5081131.559240305IPR003657WRKY domain
SuperFamilySSF1182904.18E-27241305IPR003657WRKY domain
SMARTSM007741.4E-34245304IPR003657WRKY domain
PfamPF031061.8E-23247302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAQNWLQSS QCPTSLSELS PTSVTQPISS APSPPLPEPR LSPSNVNSAC IPGADQRTSS  60
NLKSIPVPIM KTRISDGYNW RKYGQKQVKS PKGSRSYYKC TYSDCCAKKI ECADHSGHVI  120
EIVNKGTHSH DPPRKNNCTR ENKIASGPVV GNSVTEHPIS TLKDSDQATL RKESIQAIPV  180
IPDKKRQSSS GSDGNEKIQI KDELASEPEA KRRVKKENLE CSGTLLKPGK KPKFVVHAAG  240
DVGISGDGYR WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETAVDNTN AVIITYKGIH  300
DHDRPVPKKR HGPPSAPLVA AAAPASMNNL QLKKTDTFTN QGTPTQWSVG KEGELTSETL  360
DLGGEKEKAM ESARTLLSIG FEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-25233305274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700050.0KC470005.1 Jatropha curcas WRKY transcription factor 02 (WRKY02) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071501.10.0probable WRKY transcription factor 32 isoform X2
RefseqXP_020534726.10.0probable WRKY transcription factor 32 isoform X1
RefseqXP_020534727.10.0probable WRKY transcription factor 32 isoform X3
SwissprotP595831e-130WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLM9TNQ20.0M9TNQ2_JATCU; WRKY transcription factor 02
STRINGXP_002529376.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-123WRKY DNA-binding protein 32
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]