PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02129.30

Common Name

JCGZ_04860, LOC105634212

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 317aa MW: 36291.6 Da PI: 9.4737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02129.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.2	1.2e-19	49	137	2	86
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt qe+l+Li+a++ ++er ++ +k + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ s+ s ++p + +e Jcr4S02129.30 49 WTIQETLTLITAKKLDDERRSKptvpstSKPGELRWKWVENYCWAHGCYRSQNQCNDKWDNLLRDYKKVREYQSR--SDGSDSFPSYWTME 137 ************88888885333333678899**************************************8..57777899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-5	39	113	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.306	41	111	IPR017877	Myb-like domain
Pfam	PF13837	5.0E-16	48	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MSQPPTSIPP PPQPQPQPQP PSHLPLLPFS ATTTTTPTSS NREYRKGNWT IQETLTLITA 60 KKLDDERRSK PTVPSTSKPG ELRWKWVENY CWAHGCYRSQ NQCNDKWDNL LRDYKKVREY 120 QSRSDGSDSF PSYWTMERHQ RKYYNLPSNM SLEVFEALNQ VVQRRYTNIT QQNVVVSPQQ 180 QQQQQVTVVA DVPVSPVTLR EVVPEALMDR PALSEGSESS ATESSDKHDS GGSKRRRMKN 240 NNIGASIKHS ASILAQTIRN CEEKKEKRHQ ELMEFEQRRL QLEETRNEVN RQGMANLAMA 300 VTNLSSAIQS LISGHQT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072429.1	0.0	uncharacterized protein LOC105634212
TrEMBL	A0A067KQ45	0.0	A0A067KQ45_JATCU; Uncharacterized protein
STRING	cassava4.1_022367m	1e-149	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-46	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105634212

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]