PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02115.70
Common NameJCGZ_07671, LOC105638149
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 204aa    MW: 22235.2 Da    PI: 10.3616
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02115.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-196497134
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                   Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Jcr4S02115.70 64 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 97
                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-1958109IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-135899No hitNo description
PROSITE profilePS5011412.9675894IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-166297IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.16E-136395No hitNo description
PfamPF003204.3E-176497IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406489IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MYRKANKLIS CKREDNIIGD YYDGNGGGGG EGSSSITKWL PSKFQDQQCH AKSHNTNTTT  60
IRVCSDCNTT TTPLWRSGPR GPKSLCNACG IRQRKARRAM AAAAMANGTV AATETLSSSS  120
SSSTKTNYKL QYNKDKKLRT AGHVTQGKKL SKPPDPPHQT QRKLCLKNLA LSLSNNSALQ  180
RIFPQDVQEA AILLMELSCG FIHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077289.11e-149GATA transcription factor 21 isoform X2
TrEMBLA0A067KP861e-113A0A067KP86_JATCU; Uncharacterized protein
STRINGcassava4.1_031585m7e-62(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.18e-20GATA family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]