PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02105.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family LSD
Protein Properties Length: 302aa    MW: 33270.3 Da    PI: 8.5231
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02105.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.59.3e-13731125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr +L YPrGA +V+CalC+tV
  Jcr4S02105.10  7 CSGCRSILLYPRGAANVCCALCNTV 31
                   ************************9 PP
2zf-LSD147.23.6e-15172196125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Crt+L+YP+GApsV+CalC+ V
  Jcr4S02105.10 172 CGNCRTMLMYPYGAPSVKCALCHYV 196
                    **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.6E-12434IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.8E-14169199IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-14172196IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQSQLQCSGC RSILLYPRGA ANVCCALCNT VTSVPPIGHG DLCYSCFVNP VYVPKMIKML  60
TRHGNGSTYM WRLPDIAYVY TWGNKCEMLL LPHCKPCTSA FSGNYKKKIE AEMYAIQLHP  120
TFNDLFPVCI KSPLMCFLNF VSHFFWGILI CVVLDFLAMH EKASGQVAHI NCGNCRTMLM  180
YPYGAPSVKC ALCHYVTNVS ARVKQLIVTV YVPQDPLKSW PLLALPCVRI SFTVGLDLFG  240
MANVRVPLPA NRPNGAAGMI SSTSTPMPHS QTQTVVVENP MSVDESGKLV SNVVVGVTTE  300
KK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075549.12e-55protein LSD1 isoform X1
TrEMBLA0A067KSR63e-54A0A067KSR6_JATCU; Uncharacterized protein
STRINGcassava4.1_017533m4e-45(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-30LSD family protein