PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02103.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 256aa MW: 30108.8 Da PI: 7.5635 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.3 | 2.7e-20 | 31 | 98 | 15 | 86 |
trihelix 15 remeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 e+e+++ +k++k+lWe vs+kmrerg++r+p qCk+kw+nl +ryk ++++ ++ +cp+f++l+ Jcr4S02103.20 31 GELEKDFTIAKRNKALWEIVSAKMRERGYRRTPDQCKCKWKNLVNRYKGKETSDPEN----GLHCPFFKELH 98 688999*******************************************99999974....457******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 5.66E-19 | 20 | 81 | No hit | No description |
Pfam | PF13837 | 9.7E-18 | 34 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MHIPSGRGGL TAATATVDGT RDEGLDLGFE GELEKDFTIA KRNKALWEIV SAKMRERGYR 60 RTPDQCKCKW KNLVNRYKGK ETSDPENGLH CPFFKELHTV FNERAKNMQR LLFESEAGST 120 QAKKRAKRMS VDRSLNELSE DEDEDENGSG GEERLARTNS RKRKGERILT DMSSRVTITS 180 NPDIGSIHEM LKEFFQWQQQ MELQWREMME RRAHEQQLFE QEWRQSMEKI ERERLMIEQA 240 FRVEGRTEAD KRREQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070490.1 | 1e-149 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A067KU78 | 1e-148 | A0A067KU78_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_029909m | 2e-95 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 3e-23 | Trihelix family protein |