PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02087.30
Common NameJCGZ_23818, LOC105629297
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 357aa    MW: 38285.3 Da    PI: 8.487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02087.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-11290335655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Jcr4S02087.30 290 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 335
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.145284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-11288339No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAQNHWPKPE KHTATAMYPP PSTSSSSQQK RTVQTGLTRY GSAPGSFLTR AVDSVIGPDR  60
EFSNLGSPSP SLVSHHQYFS GDSSSLTSES TCQVNSSNDP KTGGGGGGGG LQRSYGFNEI  120
NGSLVRQKSS PAGFLSHMAA ENGFSITPGS GGYSSHNGTN GGHTVSRLKS QLSFTRQDSL  180
SQISEVSEDV IEGIGSNNGH QNSHHSYPSS SFGIGSWDST NSIAFSGPPS KRVKNIDGDI  240
FNCLNGLETQ FSLPQTSLEM GTVEKLLNIP EDSVPCKIRA KRGCATHPRS IAERERRTRI  300
SGRLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQTEVQK LQKELEHCTC GGCRPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066251.10.0transcription factor bHLH128
SwissprotQ8H1027e-94BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A067L3400.0A0A067L340_JATCU; Uncharacterized protein
STRINGcassava4.1_010829m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]