PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02081.30 | ||||||||
Common Name | JCGZ_12803, LOC105637317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ZF-HD | ||||||||
Protein Properties | Length: 340aa MW: 37675.2 Da PI: 9.375 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.6 | 4.6e-31 | 124 | 179 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAas Gg +vDGCgEfmp+ geegta+al+CaAC+CHRnFHR+e + e Jcr4S02081.30 124 VRYRECLKNHAASKGGFVVDGCGEFMPT-GEEGTAEALRCAACQCHRNFHRKEIDGE 179 89*************************8.999********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-22 | 124 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.9E-29 | 124 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-29 | 125 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.364 | 126 | 175 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.79E-19 | 266 | 337 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-29 | 270 | 338 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.519 | 274 | 338 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 7.0E-27 | 276 | 333 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEVRGQEKGI AMPSSLGCNP TNRDSSSKVP SSNILSAFGE TKEDDHHHHH QNLERYPLFH 60 HHQMNLQNLP LKPTGGPEQT QDPTPAPAMI TAVSANNRVA SVPSRSSSRS PPAPPGPPTS 120 TGLVRYRECL KNHAASKGGF VVDGCGEFMP TGEEGTAEAL RCAACQCHRN FHRKEIDGEH 180 QSAATNSYYK DNNQRNTIPQ QQLATSHPPI SQPSVHYHHR YPHGLTLGAP TTTPAPTIVM 240 TFGGGGAAAE SSSEDLNMFQ SNVQGYGSIQ PSSLSKKRFR TKFSQEQKEK MLEFAEKIEW 300 KIQKQDEQEV QQFCSKVGVK RKVFKVWMHN NKQAMKKKQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 277 | 332 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076140.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 8e-68 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A067KRE0 | 0.0 | A0A067KRE0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_032899m | 1e-120 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-57 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Entrez Gene | 105637317 |
Publications ? help Back to Top | |||
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