PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02028.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Dof | ||||||||
Protein Properties | Length: 132aa MW: 13482 Da PI: 7.3386 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 43.4 | 7e-14 | 26 | 50 | 3 | 27 |
zf-Dof 3 ekalkcprCdstntkfCyynnysls 27 +++l+cprCdstntkfCyynny+ s Jcr4S02028.60 26 QEHLPCPRCDSTNTKFCYYNNYNFS 50 6789*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-9 | 5 | 55 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-10 | 27 | 50 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MPSDSSSTET RRLTKPHNTG APPPDQEHLP CPRCDSTNTK FCYYNNYNFS LASSFLTGPT 60 YGQSSNVYTV LAAVAVMGRG PGFLALSGFG LGLGSAFEYM GFGLARGVWP FPGVGDGGAG 120 GVGGNGGSAG GM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022024 | 5e-80 | KF022024.1 Jatropha curcas DNA binding with one finger 2 (Dof2) mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 7e-15 | Dof family protein |