PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01973.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 207aa MW: 22912 Da PI: 4.2319 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.1 | 8e-16 | 36 | 72 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Jcr4S01973.40 36 CQHCGISEkaTPAMRRGPAGPRSLCNACGLMWANKGT 72 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.8E-12 | 30 | 83 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-11 | 32 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.0E-15 | 35 | 77 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.35E-14 | 35 | 81 | No hit | No description |
Pfam | PF00320 | 8.9E-14 | 36 | 72 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 36 | 63 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MHRKNGQFAS LKDCYNTDAG SNWEPSNVIS HSESICQHCG ISEKATPAMR RGPAGPRSLC 60 NACGLMWANK GTLRDLTKGG KQISFDQNEM GNIKPSTLER ENPYANRDEE GSPEESKPGP 120 LDSDNSVRPN EQELLETDET PTNPFPMHLE NSSVNINDED LQDTLDDLGN VSSSEFEIPG 180 NFDDQFMIPT YRLTLMNSNM GGEWPGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081381.1 | 1e-136 | GATA transcription factor 19 isoform X2 | ||||
TrEMBL | A0A067K4L3 | 1e-135 | A0A067K4L3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_010245m | 1e-107 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 6e-27 | ZIM-LIKE 2 |