PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01973.10 | ||||||||
Common Name | JCGZ_18763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 204aa MW: 21605.4 Da PI: 10.0874 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.9 | 2.5e-17 | 115 | 150 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp g++tLCnaCGl+++ kg Jcr4S01973.10 115 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 150 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 5.2E-16 | 42 | 84 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.265 | 42 | 84 | IPR010402 | CCT domain |
SMART | SM00401 | 5.5E-10 | 109 | 166 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-12 | 113 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.7E-16 | 113 | 156 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.3E-15 | 115 | 150 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 115 | 142 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.117 | 115 | 157 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.12E-15 | 115 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
VQAVLLLLGG YEIPSGIPAT GAVPLNPRGP SDLSGRSIQP QRAASLRRFR EKRKERCFDK 60 KIRYSVRKEV ALRMQRKKGQ FTSAKANSDE AGSASSGWSA TQGSGLDESM LETLCTHCGT 120 SSKSTPMMRR GPAGPRTLCN ACGLKWANKG ILRDLSKVAN MAGQGPPAKP TEQSEGEAND 180 SDAVTLPADI VSSNGDNSAL TAET |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 54 | RRFREKRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081379.1 | 1e-148 | GATA transcription factor 28 isoform X1 | ||||
Swissprot | Q8H1G0 | 9e-66 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A067K192 | 1e-146 | A0A067K192_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_013130m | 1e-112 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2836 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-59 | ZIM-like 1 |
Publications ? help Back to Top | |||
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