PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01963.20
Common NameJCGZ_05902, LOC105650688
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 287aa    MW: 32334.2 Da    PI: 6.7109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01963.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl
    Jcr4S01963.20 26 RGPWTLEEDSLLVHYIACHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
    Jcr4S01963.20  79 RGNLTPQEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.352173IPR017930Myb domain
SuperFamilySSF466892.81E-3024120IPR009057Homeodomain-like
SMARTSM007172.7E-142575IPR001005SANT/Myb domain
PfamPF002492.5E-162673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-232780IPR009057Homeodomain-like
CDDcd001677.56E-112873No hitNo description
PROSITE profilePS5129424.44774128IPR017930Myb domain
SMARTSM007171.6E-1478126IPR001005SANT/Myb domain
PfamPF002492.7E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2381127IPR009057Homeodomain-like
CDDcd001671.05E-1083122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTSSMSSLSK SISSSSSEDD AEQLRRGPWT LEEDSLLVHY IACHGEGRWN LLAKRAGLRR  60
TGKSCRLRWL NYLKPDVKRG NLTPQEQLLI LDLHSRWGNR WSKIAQHLPG RTDNEIKNYW  120
RTRVQKQARH LKVDANSRAF QDIIRYFWMP RLIQKIEGSS SSSVATTVSE NPTISQSINC  180
SPHDLLLPTA AAAPAPPPLP QEISCQGGLD HNSDSNSCIS SAESINMSRV TEYPNGYYVD  240
SICYNIGPMS LPTMSDSPAG DRHLAESDWV GYDFEENTWT MDEFMAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25241285108B-MYB
1gv2_A5e-25231281105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-252312824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346660.0KM034666.1 Jatropha curcas clone JcMYB046 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093021.10.0transcription factor MYB62
SwissprotQ9C9G75e-80MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A067JBM50.0A0A067JBM5_JATCU; MYB family protein
STRINGPOPTR_0012s05200.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-78myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]