PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01959.40 | ||||||||
Common Name | JCGZ_02348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 23270.6 Da PI: 9.5196 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 21 | 41 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ +F + L Hi +H Jcr4S01959.40 21 CRICNHVFMSTQALIDHIESH 41 ******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.328 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAGYGWSMPK RPYNSPPQIA CRICNHVFMS TQALIDHIES HMTEEDSAAR RQLPLPPPPL 60 MQPSPPAGLN FISCHRRANS LTQLNLSSPT HPLPFNPNAY NLPCNFQERN SSTNPMFSAT 120 PQMFSSRPTF QSPLSSMATK NSNYTMPFSL ATSKKKLTMA EQASGDCTKP FLQQLEKPLT 180 PYKNEFKGIH NNRNRSDLDM LDLTLKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067L769 | 1e-150 | A0A067L769_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_025807m | 4e-55 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14890 | 8 | 12 |
Publications ? help Back to Top | |||
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