PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01949.50

Common Name

JCGZ_09734, WRKY37

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WRKY

Protein Properties

Length: 535aa MW: 57787.8 Da PI: 6.2546

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01949.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	237	296	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ Jcr4S01949.50 237 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 296 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-31	223	298	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-27	230	298	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	232	298	IPR003657	WRKY domain
SMART	SM00774	2.2E-36	237	297	IPR003657	WRKY domain
Pfam	PF03106	7.8E-27	238	296	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MASCGGAVTV RHHLVSQEKG FISQETNDKV GELQDHGLNV KPSLSNNEDS SNNNKEEDVL 60 ESAKAEMGEV REENERLKMM LQQVEKDYQS LKLRFFDILR KETCKNTAES PLGCETEESH 120 ELVSLSLGRS TPSEPKKDEK NSNPSKTNNH DTENEDLKAT LTLGLSDTSS KFHMSNEPVS 180 SNPSPENSVE EEQAGGETWP PSKINTKRNT IDDEAAQQSN AKRARVCVRA RCDTPTMNDG 240 CQWRKYGQKI AKGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPVS 300 ATAMASTTSA AASMLLSGSS SSSSHQGLIS SQIPLTSTSQ YNQLNGLNFS NAVYDSSRTK 360 QIYLANPNSC PLFPTITLDL TSSGGFSSTS KFPATSLNFS SSESNLSAIW GNAYQNYGSL 420 NSTNKQQLSQ LPYMENNQQA LTETLTKAIT SDPSFRTVIA AAISSMMGSS SSVSPSSSSS 480 QLGEANGKGC GSSYFSGLSS SSSQMGNILQ SSSSLPFSIF NSASMPANVK KDQKS

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MASCGGAVTV RHHLVSQEKG FISQETNDKV GELQDHGLNV KPSLSNNEDS SNNNKEEDVL  60
ESAKAEMGEV REENERLKMM LQQVEKDYQS LKLRFFDILR KETCKNTAES PLGCETEESH  120
ELVSLSLGRS TPSEPKKDEK NSNPSKTNNH DTENEDLKAT LTLGLSDTSS KFHMSNEPVS  180
SNPSPENSVE EEQAGGETWP PSKINTKRNT IDDEAAQQSN AKRARVCVRA RCDTPTMNDG  240
CQWRKYGQKI AKGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPVS  300
ATAMASTTSA AASMLLSGSS SSSSHQGLIS SQIPLTSTSQ YNQLNGLNFS NAVYDSSRTK  360
QIYLANPNSC PLFPTITLDL TSSGGFSSTS KFPATSLNFS SSESNLSAIW GNAYQNYGSL  420
NSTNKQQLSQ LPYMENNQQA LTETLTKAIT SDPSFRTVIA AAISSMMGSS SSVSPSSSSS  480
QLGEANGKGC GSSYFSGLSS SSSQMGNILQ SSSSLPFSIF NSASMPANVK KDQKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	224	298	1	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC485289	0.0	KC485289.1 Jatropha curcas WRKY transcription factor 37 (WRKY37) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020538108.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	1e-114	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	S5CFT7	0.0	S5CFT7_JATCU; WRKY transcription factor 37
STRING	cassava4.1_026182m	0.0	(Manihot esculenta)
STRING	XP_002517481.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-79	WRKY DNA-binding protein 72

Publications ? help Back to Top
Xiong W, et al. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene, 2013. 524(2): p. 124-32 [PMID:23644253] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]