PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01914.60
Common NameJCGZ_01329, LOC105649136
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 279aa    MW: 32362.2 Da    PI: 8.7267
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01914.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.2e-091257346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE + + +a +++  +   +W+++a++++ g+t ++++  ++ 
    Jcr4S01914.60 12 EWTKEENKEFERALAMYDEHepdRWTKVAARIP-GKTVYDVIKQYRE 57
                     7*****************99*************.********99986 PP
2Myb_DNA-binding38.62.5e-12112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +   +G+g+W+ I+r +   +t+ q+ s+ qky
    Jcr4S01914.60 112 PWTEDEHRRFLMGLLTHGKGDWRNISRNFVVSKTPTQVASHAQKY 156
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-11558IPR009057Homeodomain-like
PROSITE profilePS512939.11863IPR017884SANT domain
SMARTSM007171.8E-8961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-41157IPR009057Homeodomain-like
CDDcd001675.89E-81258No hitNo description
PfamPF002494.3E-81257IPR001005SANT/Myb domain
PROSITE profilePS5129417.774105161IPR017930Myb domain
SuperFamilySSF466891.57E-15106161IPR009057Homeodomain-like
TIGRFAMsTIGR015578.5E-17108160IPR006447Myb domain, plants
SMARTSM007171.1E-9109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-9109155IPR009057Homeodomain-like
PfamPF002491.1E-9112156IPR001005SANT/Myb domain
CDDcd001675.15E-7112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSNSNWFNQS TEWTKEENKE FERALAMYDE HEPDRWTKVA ARIPGKTVYD VIKQYRELEM  60
DVSDIEAGKV PIPGYLSSPF TLEWVDDRDF DAYRKRPLPT KNGDQERKKG VPWTEDEHRR  120
FLMGLLTHGK GDWRNISRNF VVSKTPTQVA SHAQKYFIRQ QLSGVKDKRR PSIHDITTVN  180
LNDTAISDGN RHLSVEQSNA LLLQQKASSM QKMLVDWNPS KDESIMVFDS THSNLLMSTQ  240
NDIASNTLKL QGQNLYGSAY RETHINPHNL VFQRHQIRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1513781176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091086.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-93DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067LKH90.0A0A067LKH9_JATCU; Uncharacterized protein
STRINGXP_002530418.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.17e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]