PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01909.50 | ||||||||
Common Name | JCGZ_25879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ZF-HD | ||||||||
Protein Properties | Length: 233aa MW: 26032.2 Da PI: 9.8833 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 38.5 | 2.7e-12 | 57 | 84 | 33 | 60 |
ZF-HD_dimer 33 geegtaaalkCaACgCHRnFHRreveee 60 ge+gt +al+C+AC+CHRnFHR+e + e Jcr4S01909.50 57 GEQGTLEALRCSACNCHRNFHRKEIDGE 84 6779*******************98865 PP | |||||||
2 | Homeobox | 17.2 | 8.9e-06 | 167 | 223 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+ft+eq +e+ ++ e k +++ +++ ++L + +g++ r+ kvW +N + Jcr4S01909.50 167 KRFRTKFTEEQKQEMLNFAEkagwKMQNLEESAVQRLCQGIGIKRRVFKVWMHNNKH 223 789************8876677778*****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.6E-9 | 57 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-7 | 57 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.46E-20 | 155 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-29 | 157 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.6E-26 | 166 | 222 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MNNSSPQKDI PFSRNGGYAR AENGRIIATS SVSQPTSGGN TPSILLEDQK PLQEKCGEQG 60 TLEALRCSAC NCHRNFHRKE IDGEHSYHSP MISGYNPGNT LVLGHRSRPP QGYLINPLLS 120 SRRSPTPQMI VSYRSGSVPS EYDEKGNGDD DGDGAVATSP VEKKPKKRFR TKFTEEQKQE 180 MLNFAEKAGW KMQNLEESAV QRLCQGIGIK RRVFKVWMHN NKHQFAKKNS SPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-18 | 167 | 222 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088426.1 | 1e-156 | zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A067JK41 | 1e-154 | A0A067JK41_JATCU; Uncharacterized protein | ||||
STRING | XP_002518018.1 | 1e-85 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-35 | homeobox protein 31 |
Publications ? help Back to Top | |||
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