PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01883.30
Common NameJCGZ_02482, LOC105629629
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 224aa    MW: 25725.5 Da    PI: 5.9477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01883.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-1368110754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Jcr4S01883.30  68 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 110
                    57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.69861110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1862125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.36E-1364115No hitNo description
Gene3DG3DSA:4.10.280.105.8E-1767125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-1168110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPIENIGEY HNYWETKRFL ETEELDRAEF ATYKLILSSW AMDEAFSGYY DSSSPDGAAS  60
SAASKNIVSE RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HEQERRIQAE  120
IMELESGKLK KNSGSEFEQD LPVLLRSKKK KIDQFCDSRN CPIEVLEFSV VYMGEKTLLV  180
SLTCSKRTDT MVKLCEVFES LKLKIITANI TTVSGRLLKT VFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1466141978Transcription factor MYC2
5gnj_B4e-1466141978Transcription factor MYC2
5gnj_E4e-1466141978Transcription factor MYC2
5gnj_F4e-1466141978Transcription factor MYC2
5gnj_G4e-1466141978Transcription factor MYC2
5gnj_I4e-1466141978Transcription factor MYC2
5gnj_M4e-1466141978Transcription factor MYC2
5gnj_N4e-1466141978Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066631.11e-164transcription factor bHLH35 isoform X1
SwissprotQ2HIV93e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A067LEK71e-163A0A067LEK7_JATCU; Uncharacterized protein
STRINGcassava4.1_015716m1e-131(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-72bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]