PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01879.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 694aa    MW: 79499.5 Da    PI: 7.2507
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01879.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.81.4e-3177168291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p
  Jcr4S01879.40  77 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVP 168
                    9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-3077168IPR004330FAR1 DNA binding domain
PfamPF105513.0E-33289381IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MENEVLEFDI GLGGPDDDGV DIDHAVDDED MPDTPPIATA HLTGAGSGEI FLPEGDLLDL  60
EPYEGMEFES EEAAKAFYNS YARRVGFSTR VSSSRRSRRD GAIIQRQFVC AKEGFRNLNE  120
KRTKDREIKR PRTITRVGCK ASLSVKMQDS GKWVVSGFVR EHNHELVPPD QVHCLRSHRQ  180
ISGPAKTLID TLQAAGMGPR RIMSALIKEY GGISKVGFTE VDCRNYMRNN RQRSLEGDIQ  240
LLLDYLRQMH NENPNFFYAV QGDEEQYTGN VFWADPKART NYTYFGDTVT FDTTYRSNRY  300
RLPFAPFTGV NHHGHPVLFG CAFLINETEA SFVWLFNTWL TAMSGRHPVS ITTDHDAVIR  360
SAIMQVFPET RHRFCKWHIF KKCQEKLSHV FLKHPNFEAE FHKCVNLTES IEEFESCWLS  420
LVDRYDLRDH EWLQTIYSAR RQWVPFFKLY EKALESRNEK EVKADYDTMN TSPALKTPSP  480
MEKQASELYT RKLFNEISRG ASGHVLAVFR VTNVLTLPSH YILKRWTRNA KSSVILEERA  540
TDVYTNYLES HTVRYNTLRH EAFKFVDEGC KSLDTYNVAA SALQEAARRV ALATKNEGRG  600
TLVNGRGRGE LASNGNANRT NFPSGNHQGS STQQLSQDDM DKKIQELTNE LDYANRKCEV  660
YRANLLSVLK DIEDHKLQLS IKVQNIKISM KDSI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486554.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLM5VLX00.0M5VLX0_PRUPE; Uncharacterized protein
STRINGXP_006486554.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]