PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01852.10
Common NameJCGZ_15621, LOC105630456
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 393aa    MW: 43690.2 Da    PI: 7.1024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01852.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-16124169147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
    Jcr4S01852.10 124 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 169
                      899*****************************.***********996 PP
2Myb_DNA-binding57.53.2e-18176219146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
    Jcr4S01852.10 176 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 219
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201119170IPR017930Myb domain
SMARTSM007173.3E-14123172IPR001005SANT/Myb domain
PfamPF002496.5E-16124169IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-28124217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-26125177IPR009057Homeodomain-like
CDDcd001673.16E-13127168No hitNo description
PROSITE profilePS5129427.592171225IPR017930Myb domain
SMARTSM007178.2E-15175223IPR001005SANT/Myb domain
PfamPF002495.1E-15176218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-21178224IPR009057Homeodomain-like
CDDcd001673.92E-12178218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASNKCVIYA PSNAISCYSS SSSPPSSSSS SGMVLADIAS LSLTCNHGGG GGVTQPPVSS  60
SSSSTRSAWG FPFMESKGCD DFSDGFGENN DTTIINDDNI DPNNENMISG KETDSSGQSK  120
LCARGHWRPA EDTKLKELVA LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFT  180
EEEEERLMQA HRLYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQST AYRRRKLSQS  240
VYRRIEETST TTTTTTTTTS FISRNPEPQP PQPYCFTNMS PYPIGNFNVA EQAGSSIPFD  300
FFSVSDCSGA FAGPKSNDMM GMLRQNRSWD RPSNNNNIEP HNNVISPGFF TQQQDPYIMA  360
MQQSNCYQNP YCSFSSDSTT AQASSPSLPE SHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341242247107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346330.0KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067661.10.0transcription factor MYB44
TrEMBLA0A067LAW80.0A0A067LAW8_JATCU; MYB family protein
STRINGcassava4.1_032253m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-77myb domain protein 105
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]