PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01815.10 | ||||||||
Common Name | JCGZ_12349, LOC105639667 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 32727.7 Da PI: 6.3005 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.4e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv kll++l +++reda++sl+yeAear+rdPvyG+vg+i+ lq++l++l+ +l Jcr4S01815.10 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVFGASNVAKLLNELTPTQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKELQGDLYN 102 7******************************************************************************************99998 PP DUF260 97 lkee 100 +k+e Jcr4S01815.10 103 AKKE 106 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.172 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-43 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSTPNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH RVFGASNVAK LLNELTPTQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKELQGDL YNAKKELAQY IGPQAMLPTL 120 QSPPYMAAQP ANLGNPSPSL IQHGGLPIMG IPTGQLSVRE QQQQQRVYDA QQLAAALAAR 180 EQQEMFRVYE HQQQQQEIVR FNRGFDSSDS VNNNNNNTTG FNQIAVAAMS PSLALGSFDI 240 TPYQIQPEQI DQHHHLQAQL FLQSEQEEQQ SQPTQQPKHQ RSGSDEGGCV VPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-51 | 5 | 119 | 9 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-51 | 5 | 119 | 9 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079180.1 | 0.0 | LOB domain-containing protein 36 | ||||
Refseq | XP_020537198.1 | 0.0 | LOB domain-containing protein 36 | ||||
Swissprot | Q9FKZ3 | 9e-87 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A067KA72 | 0.0 | A0A067KA72_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_025228m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-85 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 105639667 |
Publications ? help Back to Top | |||
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