PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01808.70

Common Name

JCGZ_23166, LOC105647373

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 307aa MW: 35483.3 Da PI: 6.4257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01808.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	158	182	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ +++++H+++ H Jcr4S01808.70 158 FYCDLCNKQYKLAMEFEVHLSSydH 182 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	1.9E-17	61	106	IPR000467	G-patch domain
PROSITE profile	PS50174	16.528	63	108	IPR000467	G-patch domain
Pfam	PF01585	7.4E-16	64	104	IPR000467	G-patch domain
Pfam	PF12171	5.4E-5	158	185	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	160	182	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDSRRFGYDQ EINTHDKNQQ DREQDSLIED LAEDFRLPIS HKPTENVDLD NVEQASLDTR 60 LTASNIGFRL LQKMGWKGKG LGKDEQGITE PIKSGIRDPK LGIGKQEEDD FFTAEENIQR 120 KKLEIEIEET EEHAKKREVL AEREQKIQTE VKEIRKVFYC DLCNKQYKLA MEFEVHLSSY 180 DHNHRKRFKE MREMHGGSSR DERQKRELQR QEREMAKFAQ MADARKQQQQ QQQQQQQQQQ 240 QQNESGSTQV PNSLKSATAL ADQDQRNVLK FGFSSKGGTS KKSSGSAAKK SKVAVASVFG 300 NDSDEEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088820.1	0.0	G patch domain-containing protein 8
Refseq	XP_020540323.1	0.0	G patch domain-containing protein 8
TrEMBL	A0A067JKK1	0.0	A0A067JKK1_JATCU; Uncharacterized protein
STRING	cassava4.1_012893m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5977	24	28

Link Out ? help Back to Top
Entrez Gene	105647373

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]