PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01788.10 | ||||||||
Common Name | JCGZ_15573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27478.7 Da PI: 6.7939 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 30 | 83 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Jcr4S01788.10 30 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 83 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.5e-42 | 29 | 119 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n++L++++++L++e+ Jcr4S01788.10 29 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNDALQAQNQKLHAEI 119 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-20 | 9 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 28 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-15 | 30 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.60E-15 | 30 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-19 | 32 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.5E-6 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.5E-6 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.8E-16 | 85 | 125 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSFSGIDASC HEEANVEDEL SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL 60 ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDLLKRQFEA IKADNDALQA QNQKLHAEIL 120 ALKSREPTES INLNKETEGS CSNRSENSSD IKLDISRTPA IDSPLSNHPT SRPRFPPTSM 180 RPTGVAQLFH TNSSSRPDHH VQCHNKIDHM VKEESLSNMF CAIDDQTGFW PWLEQQHFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 85 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012067598.1 | 1e-178 | homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 6e-98 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A067KY82 | 1e-177 | A0A067KY82_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014818m | 1e-158 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-100 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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