PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01770.70
Common NameJCGZ_16100, WRKY42
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 348aa    MW: 38199.4 Da    PI: 10.0951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01770.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27276331357
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                    D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+ n
  Jcr4S01770.70 276 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERALDDSMMLIVTYEGDVN 331
                    9************************9988***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-18227272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.0E-29262331IPR003657WRKY domain
PROSITE profilePS5081127.703269335IPR003657WRKY domain
SuperFamilySSF1182905.62E-23272329IPR003657WRKY domain
SMARTSM007741.6E-32274334IPR003657WRKY domain
PfamPF031064.3E-23276329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAVELMMGYS ADSFAAKMQE SAVREAATAG IQNVEEVIKL LKQNQPQQQQ YYPELSSNNP  60
SGSDDIMAVT DAAVNSFKKV ISLLGRTNRT GHARFRRAPV STASAPQLPQ QQVQDPGPSV  120
RPINSQQTEQ VSAFKVYQPT PVHRLPPLPN NHNQQAKPLL VTKNGFSERN EMPSSINFSN  180
SPSISAATSF MSSLTGETDS VQRSMSSGFQ FAQPTVGKPP LSSTSLKRKC SSMDDAALKC  240
GSSSGRCHCS KKRKSRVKRV IRVPAISNKM ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC  300
SSMRGCPARK HVERALDDSM MLIVTYEGDV NADLLIPIPY SRAIGYVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20262334273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852940.0KC485294.1 Jatropha curcas WRKY transcription factor 42 (WRKY42) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533746.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-118WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLS5CS780.0S5CS78_JATCU; WRKY transcription factor 42
STRINGcassava4.1_010539m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-91WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]