PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01769.10
Common NameJCGZ_01538, LOC105648348
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 492aa    MW: 53310.6 Da    PI: 7.9226
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01769.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.41.8e-18101193186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkryk....kikegekkrtsessstcpyfdqle 86 
                    +W++  + +L++a++e+ ++l+rg+l++ +Weev+++++erg    ++s +qCk+k++nl+kryk    +i++++++  s+ ss++ +f+q+e
  Jcr4S01769.10 101 EWSDTAISCLLDAYTEKYNQLNRGNLRGRDWEEVAEAVSERGGgnnKKSVEQCKNKIDNLKKRYKvelqRINNSAGGFGSGGSSSWHWFKQIE 193
                    5*************************************7776545588****************94333344444444699999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2199195No hitNo description
SMARTSM005950.0018109194IPR006578MADF domain
Gene3DG3DSA:3.40.1160.106.5E-71245485IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536336.15E-57252485IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.599252486IPR015963Uridylate kinase, bacteria
CDDcd042542.69E-119255486No hitNo description
PfamPF006962.0E-22256465IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
ASDDFPLIND PHAPTRHPDA ESVNGGDYYT AYADSDQDKS GSGAPATPSS KRNHQSQHHH  60
YYYSNDNNKK HKPNGNNVES ESNISNTSAE YRADYRKDRE EWSDTAISCL LDAYTEKYNQ  120
LNRGNLRGRD WEEVAEAVSE RGGGNNKKSV EQCKNKIDNL KKRYKVELQR INNSAGGFGS  180
GGSSSWHWFK QIEAIMGNSS NAKAGGGGES ECGVGGSGGT GNCNLLARQV KRYPPSNVAF  240
ANNLKAKSMP NLKWRRVVFK ISGAALAGNC QNIDPKVAMQ IAREVATACR LGLEVAIVVG  300
GRNFFCGDSW ISATGLERPT SYQIGMMATV MNSILLQSAL EKLGVQTRVQ SAFAMPELVE  360
PYSRKRAIRH LEKGRVVIFG GVGAGAGNPL FTTDTAAALR ASEINAEALL KGTNVDGIYD  420
CHSGNTNIML DHLSFREVVS RGVALMDMMA ITYCEENGIP VVVFNLLEPG NISRALCGDQ  480
VGTLIDQAGR IS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-632484853239Uridylate kinase
3ek5_B2e-632484853239Uridylate kinase
3ek5_C2e-632484853239Uridylate kinase
3ek5_D2e-632484853239Uridylate kinase
3ek5_E2e-632484853239Uridylate kinase
3ek5_F2e-632484853239Uridylate kinase
3ek6_A2e-632484853239Uridylate kinase
3ek6_B2e-632484853239Uridylate kinase
3ek6_C2e-632484853239Uridylate kinase
3ek6_D2e-632484853239Uridylate kinase
3ek6_E2e-632484853239Uridylate kinase
3ek6_F2e-632484853239Uridylate kinase
3nwy_A6e-6325448550279Uridylate kinase
3nwy_B6e-6325448550279Uridylate kinase
3nwy_C6e-6325448550279Uridylate kinase
3nwy_D6e-6325448550279Uridylate kinase
3nwy_E6e-6325448550279Uridylate kinase
3nwy_F6e-6325448550279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090101.10.0uncharacterized protein LOC105648348
TrEMBLA0A067LCR40.0A0A067LCR4_JATCU; Uncharacterized protein
STRINGcassava4.1_006212m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-153Trihelix family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]