PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01758.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SBP | ||||||||
Protein Properties | Length: 345aa MW: 38298.4 Da PI: 8.5004 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 40.5 | 7.4e-13 | 148 | 184 | 2 | 38 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgl 38 CqvegC++ l +ak+yhrrhkvCe+hskap++ s Jcr4S01758.60 148 CQVEGCHVVLVNAKDYHRRHKVCEMHSKAPKCRSSTN 184 ******************************9987654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.9E-13 | 143 | 180 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.349 | 145 | 178 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.94E-12 | 146 | 180 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.4E-8 | 148 | 181 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MAVTCTVLTT TVTEASKMHH RHCCCHDNPL LGKVPTLRTQ KPLLTHALVL PNENLYLHHY 60 HHHEDHYQQH SLYGGEGSNL HPDPHLMCLK LGKRHYFEDN IAVGERQVAS LCIGKKKKSY 120 YSVVDGGTVR PLSSAAGEVV AAAAVPKCQV EGCHVVLVNA KDYHRRHKVC EMHSKAPKCR 180 SSTNQRGAVG GDWQVTMREE ERVLTILFPG TLAQKRLIWS STEKLMARRI PCLASTTGRA 240 LSLLSSKEDS WVSSSDLSSR SSAALRGRHQ SSQASSNSCF VPHQHQILAE SQNWGRFHDS 300 GTQLTLDLMQ APSSAFGFLP TRAKNTKDEE ESCAELWDTW AGAHI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083645.1 | 1e-145 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A067K966 | 1e-144 | A0A067K966_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_008947m | 3e-97 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 9e-12 | squamosa promoter binding protein-like 2 |