PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01684.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family DBB
Protein Properties Length: 548aa    MW: 60204.1 Da    PI: 6.6548
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01684.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-05235336
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                   e++C+ +   +   +C+ ++ +lC +C  + H+ 
  Jcr4S01684.50  2 EKICEFCTALRPVVYCKADGAYLCLSCDAKVHSA 35
                   689******99******************99954 PP
2zf-B_box18.44.6e-064783538
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    C+ + ++++   C d q++lC+ C +++H g    H+
  Jcr4S01684.50 47 LCDSCRNHPAYARCLDHQMFLCRGCDQNIH-GvssqHQ 83
                   7*****************************.6567787 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.1E-4147IPR000315B-box-type zinc finger
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000212.65E-4435No hitNo description
PROSITE profilePS501199.1154387IPR000315B-box-type zinc finger
CDDcd000219.77E-54776No hitNo description
SMARTSM003360.044887IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEKICEFCTA LRPVVYCKAD GAYLCLSCDA KVHSANAVSN KHLRTLLCDS CRNHPAYARC  60
LDHQMFLCRG CDQNIHGVSS QHQKRLVSSF MGCPSAKDFA GLWGFKLDEV DKNAFRDQLF  120
STPRASVQPN AATIAIHKES CRQIGSSSRT SKISLKGQGQ QNNGFILLQI LDLKKLQLTE  180
IDNSSPLTCG LEETDVSSSI FESMEKFNDS VDLFQNSQDP GKGDCPLQEL NADALPSSFS  240
QPEHLPLSST AANPLLGESF WQCKSPVQSN QLWSQNMQDL GVCEHIVCHD DINIPDVDLT  300
FRNFEELFGG EQDPVRAPLD DKDASCSSLE KDMSLDTLHN RNARKVIVVL SGTSICIVSR  360
KLYTKILLTI SVFMLITQVT IGQSCGLGKE ACAMSDCPND RQSGALVHFT FLKSSYAICC  420
LNHKHAQIEH GTSIASSAYI SRPVHMDKDK GPSTQVYTLP GSLHAPRTIQ PSYSAMSFSV  480
SRLSAESSAT EYIDSGFSPY IIGAEVSCRS PEKGAHSGDK ENAIMRHKEK KMARIDSSLV  540
SYIDYGHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075709.10.0putative zinc finger protein At1g68190 isoform X1
TrEMBLA0A067KFJ70.0A0A067KFJ7_JATCU; Uncharacterized protein
STRINGcassava4.1_022899m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF869244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-28B-box type zinc finger protein with CCT domain