PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01679.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 268aa MW: 29669.3 Da PI: 8.4564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01679.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.6e-08	132	196	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas.............kapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + p+ Ka +L + ++YI+sLq Jcr4S01679.50 132 SHSLAERARREKISERMKILQDLVPGCNkvlvvvflalssvIFPHDVIGKALVLDEIINYIQSLQ 196 8***********************888*****99988999999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.54E-7	126	200	No hit	No description
SuperFamily	SSF47459	5.23E-15	126	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.742	128	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-15	128	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-6	132	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-7	134	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MKRQTVLVVD WGLRLRNLGG GFGERDGSAE ESTITVQSVG GTSGNGRKRR DLSSEDESSK 60 MVSTSSSGNE LNDSNGKRMK LSEYRNEDRN SKAEVEPSSV ANKKPAEQSK TSEPPKQDYI 120 HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK VLVVVFLALS SVIFPHDVIG 180 KALVLDEIIN YIQSLQRQVE FLSMKLEAVN SGMNMNPTIE GFHPKDVGTP QFDVAGMIFG 240 PQAARDYAQA SQSEWLHMQI GGNFERTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250\|UniProtKB:Q69WS3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022012	1e-152	KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012080171.1	1e-157	transcription factor bHLH79
Swissprot	Q84T08	3e-71	BH089_ORYSJ; Transcription factor BHLH089
TrEMBL	A0A067K836	1e-156	A0A067K836_JATCU; Uncharacterized protein
STRING	cassava4.1_013487m	1e-132	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-73	bHLH family protein

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]