PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01650.10
Common NameJCGZ_14402, LOC105642988
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family BES1
Protein Properties Length: 701aa    MW: 78768.8 Da    PI: 5.6791
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01650.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221463.2e-45762171135
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasasp 90 
                    gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p    ++a+++ ss+ +s+
  Jcr4S01650.10  76 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPVtgtSAAATTSSSHLVSQ 171
                    6899*****************************************************************988889999885333344444445888 PP

         DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsislasaas 135
                    +++++ ++ +s   ++ ve  s+++k + +p ps +d  +++++++
  Jcr4S01650.10 172 QTPSTsLRGVSPGYRTSVEYNSSRLKGVFMPTPSPFDLPTSTQSQT 217
                    8887778999***************************987765433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.5E-4078215IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.77E-183258697IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-202261695IPR013781Glycoside hydrolase, catalytic domain
PfamPF013739.7E-105267687IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72298312IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72319337IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72341362IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060345353IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008424.0E-8424433IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.4E-72434456IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72507526IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72541557IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72558569IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-72576599IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.0E-8579589IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.4E-72616638IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.0E-8667681IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.0E-8682696IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MSSDMQKLIG TSEEDDEEEM DMDVKEEDDE DEENREKHMA TQVMVGIDGG MVPNSNSPFL  60
HHQHIQEQVS TPGGGGGARR SRPLEEKERT KLRERHRRAI TARILAGLRR HGNYNLRVRA  120
DINDVIAALA REAGWVVLPD GTTFPSRSQG SRPVTGTSAA ATTSSSHLVS QQTPSTSLRG  180
VSPGYRTSVE YNSSRLKGVF MPTPSPFDLP TSTQSQTSAM MGDGVEQTES HPLIGGSLDT  240
INDKQVVDIA SKLSERDFAG TPYIPVYVML PLGVINMKCE LADPDGLLKQ LSVLKSANVD  300
GVMVDCWWGI VEAHAPQEYN WNGYKRLFQM VRELKLKLQV VMSFHECGGN VGDDVCIPLP  360
HWVAEIGRSN PDIFFTDREG RHNPECLSWG IDKERVLRGR TALEVYFDYM RSFRVEFDEF  420
FEDGLVSMVE VGLGPCGELR YPSCPVKHGW RYPGIGEFQC YDQYFLKSLR KMAEARGHPF  480
WARGPENAGS YNSQPHETGF FCDGGDYDGY YGRFFLNWYS RVLVEHGDRV LSLAKLAFEG  540
TQIAAKLSGI HWWYKTASHS AELTAGFYNP SNRDGYAAIA IMLKKHGAAL NFSCSELRML  600
DQQVEFAEAL ADPDGLLWQV LNTAWDVNIP IASENALPCH DRVGYNKILD NAKPLNNPDG  660
RHFLSFTYLR LSPLLMERHN FMEFERFVKR MHGEAVLDLQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-15826369411444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083397.10.0beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A067JXD90.0A0A067JXD9_JATCU; Beta-amylase
STRINGcassava4.1_002728m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]