PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01618.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 254aa    MW: 29579 Da    PI: 7.574
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01618.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.82.1e-1625116187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    +W+++ + +L+e+  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++l+a
  Jcr4S01618.10  25 CWSEEATSTLVEVWGKRYLELNRGNLRQKDWQEVADAVnakhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFESLDA 116
                    7**************************************999999999*************************999888899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2623117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGDLTDSVTP STTPHSRPLP IREDCWSEEA TSTLVEVWGK RYLELNRGNL RQKDWQEVAD  60
AVNAKHGHTK KTHRTDVQCK NRIDTIKKKY KIEKARVTSS NGTLTSSWPF FESLDALIGS  120
NFSAKKQASP SLSPSPPVAL PLTSYRRTPN QQRRSSESEE EEEEERERER ERESEEDEEG  180
EGIRRLARAI ERFGEVYERV ESEKLRQMLD LEKQRMKFAK DLEMERMRIF TETQIQLEKI  240
KKGKRSGSNG ERDY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652821.11e-143trihelix transcription factor ASIL2-like isoform X2
RefseqXP_021652824.11e-143trihelix transcription factor ASIL2-like isoform X4
TrEMBLA0A2P2KXN51e-137A0A2P2KXN5_RHIMU; Uncharacterized protein MANES_17G056000
STRINGPOPTR_0003s11850.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-45sequence-specific DNA binding transcription factors