PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01614.10

Common Name

JCGZ_05254

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 391aa MW: 43961.5 Da PI: 9.6926

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01614.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	339	359	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF ++ L +H++ + Jcr4S01614.10 339 TCSQCGKSF-KPEKLYTHMKAC 359 6******.*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF031043	3.2E-57	2	386	IPR021182	Uncharacterised conserved protein UCP031043
Pfam	PF06136	1.8E-41	11	317	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MHKGGEVRRL HIIYFLSRLG RIEQPHLIRV HHLYRNGVYL RDVKRWMADL RGKDMPESFS 60 WSYKRKYKNG YVWQDLLDDD LITPISDNEY VLKGSEIFPA ISFDDDKKVS MLKNDKNVQV 120 GNQIDDNQLQ EKQESPDPSR IRIPTKAPSE NYEGPPIFIF SSEESTSSDD LITKQEQDES 180 KQGMDNFESL SSSCFRSNPL LGERNKKNKK TNIKEYNDSS SSIEKMDSLS SPFSLSPQSQ 240 FAKSKSHSTG ASKMLRSLMT CGAVDTKDAA LVAINVYSPS LNKADICSTR VLGTSWSQQQ 300 QYNSRRSSDG AKNSEKKQQS RFSNPKEVPA AYKPVGAPTC SQCGKSFKPE KLYTHMKACK 360 GMKTSAKTAA ASVRNPPPPS GNSMNHLMAI S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MHKGGEVRRL HIIYFLSRLG RIEQPHLIRV HHLYRNGVYL RDVKRWMADL RGKDMPESFS  60
WSYKRKYKNG YVWQDLLDDD LITPISDNEY VLKGSEIFPA ISFDDDKKVS MLKNDKNVQV  120
GNQIDDNQLQ EKQESPDPSR IRIPTKAPSE NYEGPPIFIF SSEESTSSDD LITKQEQDES  180
KQGMDNFESL SSSCFRSNPL LGERNKKNKK TNIKEYNDSS SSIEKMDSLS SPFSLSPQSQ  240
FAKSKSHSTG ASKMLRSLMT CGAVDTKDAA LVAINVYSPS LNKADICSTR VLGTSWSQQQ  300
QYNSRRSSDG AKNSEKKQQS RFSNPKEVPA AYKPVGAPTC SQCGKSFKPE KLYTHMKACK  360
GMKTSAKTAA ASVRNPPPPS GNSMNHLMAI S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020541409.1	0.0	protein UPSTREAM OF FLC isoform X1
Refseq	XP_020541410.1	0.0	protein UPSTREAM OF FLC isoform X1
TrEMBL	A0A067J9D7	0.0	A0A067J9D7_JATCU; Uncharacterized protein
STRING	cassava4.1_025631m	1e-103	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]