PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01553.20

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 584aa MW: 65775.9 Da PI: 6.7703

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01553.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.1	4.6e-36	191	304	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ +++++++ Jcr4S01553.20 191 TGRKDRHSKVCTAKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwtpttvattR------TTTQQDQI------ 274 79**************************************************************665543222220......11111111...... PP TCP 87 sg............................k 89 + + Jcr4S01553.20 275 -SderdyqfsmenlavlggssggntrtiagN 304 .111223334444556666655555554441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-33	191	306	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.024	193	251	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MGVMEVEKLN GRTFWKRQQE EQKQETEWWQ QLHKQQEEIR KEQNQKTEXN HHSHHLLHHY 60 QHHQQQQQQE QENQETVLNS RHVEEEEEEQ QELPKQQPHF YHHQLPFLVQ QDHQSPSFYQ 120 RLDLQQLQPP LQPPKKRSYL SSSSTLPEQS IEYARKMGES HRQAATSSRL GARNTGGEIV 180 EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR VRLSANTAIQ FYDVQDRLGY DRPSKAVDWL 240 IKKAKAAIDE LAELPPWTPT TVATTRTTTQ QDQISDERDY QFSMENLAVL GGSSGGNTRT 300 IAGNATTTST VGSDVQNMEH QHLQENPSNT YSFLPPSLDS DAIADTIKSF FPMGASAETS 360 SASIQFQSYP PDLLSRTSSQ NQDLRLSLQS FQEPILLQHH QQPPPPHHHG GEQQLFLSGT 420 TGNQIGFDGP SAGWSEHHHR HPAEISRFQR MVAWNAGGAA DTGIGGGVSN GGFIFNTSVP 480 PQTVLSPPLL QPLFGQNQFF SQRGPLQSSN TPSVRAWIDP SITSDHHHHH QIPQIHQQPS 540 PISGFAASIG GFSGFRVPAR IQGEEEEHDS IHNKPSSASS DSRH

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MGVMEVEKLN GRTFWKRQQE EQKQETEWWQ QLHKQQEEIR KEQNQKTEXN HHSHHLLHHY  60
QHHQQQQQQE QENQETVLNS RHVEEEEEEQ QELPKQQPHF YHHQLPFLVQ QDHQSPSFYQ  120
RLDLQQLQPP LQPPKKRSYL SSSSTLPEQS IEYARKMGES HRQAATSSRL GARNTGGEIV  180
EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR VRLSANTAIQ FYDVQDRLGY DRPSKAVDWL  240
IKKAKAAIDE LAELPPWTPT TVATTRTTTQ QDQISDERDY QFSMENLAVL GGSSGGNTRT  300
IAGNATTTST VGSDVQNMEH QHLQENPSNT YSFLPPSLDS DAIADTIKSF FPMGASAETS  360
SASIQFQSYP PDLLSRTSSQ NQDLRLSLQS FQEPILLQHH QQPPPPHHHG GEQQLFLSGT  420
TGNQIGFDGP SAGWSEHHHR HPAEISRFQR MVAWNAGGAA DTGIGGGVSN GGFIFNTSVP  480
PQTVLSPPLL QPLFGQNQFF SQRGPLQSSN TPSVRAWIDP SITSDHHHHH QIPQIHQQPS  540
PISGFAASIG GFSGFRVPAR IQGEEEEHDS IHNKPSSASS DSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-20	198	251	1	54	Putative transcription factor PCF6
5zkt_B	6e-20	198	251	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00009	PBM	Transfer from 929286	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012074215.1	0.0	transcription factor TCP3
Swissprot	Q9MAH8	1e-106	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A067KVJ7	0.0	A0A067KVJ7_JATCU; Uncharacterized protein
STRING	cassava4.1_004517m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	7e-85	TCP family protein

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]