PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S01525.30 | ||||||||
Common Name | JCGZ_16042, LOC105630862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22584.8 Da PI: 8.589 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.6 | 2.7e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +P++Gavg++++++++++q++ Jcr4S01525.30 2 SCNGCRVLRKGCSETCILRSCLhwittPEAQGNATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPINGAVGLLWSGNWHVCQAA 97 6*********************************************************************************************** PP DUF260 92 aelal 96 +e++l Jcr4S01525.30 98 VETVL 102 99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.579 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SCLHWITTPE AQGNATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPIN GAVGLLWSGN WHVCQAAVET VLSGGILRPL PGILAGVLAP 120 NYNESSDSFS AEACRLRDVW TQSKPHVNVA SGNQASDLNL SLTPKLVASG KAGRKKRGKD 180 TMSSYTEESS ETTTFESSGG DRKKLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068238.1 | 1e-154 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 6e-70 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A067LAV8 | 1e-153 | A0A067LAV8_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016184m | 1e-134 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-67 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105630862 |
Publications ? help Back to Top | |||
---|---|---|---|
|