PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01475.60
Common NameJHL07K02.16
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 230aa    MW: 25727.5 Da    PI: 10.1243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01475.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-2154103255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa a+++a+++++g
  Jcr4S01475.60  54 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAALAYDEAALRFKG 103
                    7********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3353112IPR001471AP2/ERF domain
SMARTSM003801.1E-3654117IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2254112IPR016177DNA-binding domain
PROSITE profilePS5103224.63254111IPR001471AP2/ERF domain
CDDcd000182.94E-2054112No hitNo description
PfamPF008476.9E-1554103IPR001471AP2/ERF domain
PRINTSPR003671.1E-115566IPR001471AP2/ERF domain
PRINTSPR003671.1E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTAMISALAQ VMGSSTQNNP IHDIPLAIPQ SNTQGLHPPQ PQTVQDQGST RRRHYRGVRQ  60
RPWGKWAAEI RDPNKAARVW LGTFDTAEAA ALAYDEAALR FKGCKAKLNF PERVQGRTQS  120
GFLTNNRQQQ QQQQQQQTNN ITPPRHPQSR QEVFQYPQYL PGGLMNYSMP PVGPYYNAGR  180
NPVPSTTASS SSASSVPSHH EQEELLLRHS MQFGSPYSHS NPSTDHSSRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2553114163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119620.0AP011962.1 Jatropha curcas DNA, clone: JHL07K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090578.11e-137ethylene-responsive transcription factor ERF114
SwissprotQ9FH549e-47EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLE6NU161e-169E6NU16_JATCU; JHL07K02.16 protein
STRINGcassava4.1_027342m2e-65(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]