PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S01444.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 664aa MW: 76808.2 Da PI: 6.1881 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.6 | 3.6e-22 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Jcr4S01444.60 68 EYYGNFARRNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159 59********************8888.*******************************************99877789*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-20 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.6E-17 | 291 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.719 | 536 | 571 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.3E-8 | 536 | 571 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.7E-6 | 546 | 573 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 664 aa Download sequence Send to blast |
MTQVPSKNIW MRRQQCPCGD WKCYITHEGD TEETSIASHL VKNDTFQSEA MVAPYVGMVF 60 KSDDDAFEYY GNFARRNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHHIVKMLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLAEKREN 240 DTMELLEACK ATKEVDEEFV YDYTVDENDK VENIAWSYGD SVRAYSLFGD VVYFDTSYRS 300 ITYGMLFGAW LGIENNGKTI FFGCALLQDE TPRSSIWALQ AFIHLMKGKF PQTILTDLDM 360 GLKDAISSEL PSTKHVISIW NILPKSIEEF DLHWSQMVSM FGLGSDKHIS LLNSLRASWV 420 LSYVRGNFLA RMETSAYSKS VDEFLKGVCS AQTCLRSFFE QVGISANFQN QTRREIQYTL 480 MKTCMPIEEH ARSILTPFAF SALQHELVLA MQYALSEIAN GSCLVHHFKK MDGENFVVWI 540 SEDDQIHCSC KEFESSGILC RHALRVFIQK NYFQLPENYY LSRWRRGSSL VFYDDQYTHS 600 NNEEWLREYQ SLTETLFAES SITKERTDFV RRELPKELTR ILNEVREMPE SDGVAMDMTP 660 SPTG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073075.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A251KIN9 | 0.0 | A0A251KIN9_MANES; Uncharacterized protein | ||||
STRING | EOY28958 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
---|---|---|---|
|