PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01444.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 664aa    MW: 76808.2 Da    PI: 6.1881
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01444.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.6e-2268159190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk+t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Jcr4S01444.60  68 EYYGNFARRNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHELL 159
                    59********************8888.*******************************************99877789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2068159IPR004330FAR1 DNA binding domain
PfamPF105518.6E-17291382IPR018289MULE transposase domain
PROSITE profilePS5096610.719536571IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-8536571IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6546573IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MTQVPSKNIW MRRQQCPCGD WKCYITHEGD TEETSIASHL VKNDTFQSEA MVAPYVGMVF  60
KSDDDAFEYY GNFARRNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTGEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHHIVKMLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLAEKREN  240
DTMELLEACK ATKEVDEEFV YDYTVDENDK VENIAWSYGD SVRAYSLFGD VVYFDTSYRS  300
ITYGMLFGAW LGIENNGKTI FFGCALLQDE TPRSSIWALQ AFIHLMKGKF PQTILTDLDM  360
GLKDAISSEL PSTKHVISIW NILPKSIEEF DLHWSQMVSM FGLGSDKHIS LLNSLRASWV  420
LSYVRGNFLA RMETSAYSKS VDEFLKGVCS AQTCLRSFFE QVGISANFQN QTRREIQYTL  480
MKTCMPIEEH ARSILTPFAF SALQHELVLA MQYALSEIAN GSCLVHHFKK MDGENFVVWI  540
SEDDQIHCSC KEFESSGILC RHALRVFIQK NYFQLPENYY LSRWRRGSSL VFYDDQYTHS  600
NNEEWLREYQ SLTETLFAES SITKERTDFV RRELPKELTR ILNEVREMPE SDGVAMDMTP  660
SPTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073075.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A251KIN90.0A0A251KIN9_MANES; Uncharacterized protein
STRINGEOY289580.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]