PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01429.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 318aa MW: 37069.2 Da PI: 6.3945

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01429.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.9	1e-21	34	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+e+ Li++++ +e+r+ r++ +++p+W++vs++++++ ++r+p+qC+++w+nl ++kkik++e r++e+++ +++ ++l+ Jcr4S01429.30 34 RWSKEETFILIKGKKVVENRVYRSCrssstlgldQIEPKWDSVSSYCKQHAVNRGPEQCRKRWSNLLCDFKKIKNWELHRKDEDETFWKMRNELR 128 8********************98888899999********************************************999999999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.4E-11	33	124	No hit	No description
PROSITE profile	PS50090	7.468	34	100	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	34	101	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAPDSVDAQQ LTSLSDKIQQ QAFDNGLKAT RHPRWSKEET FILIKGKKVV ENRVYRSCRS 60 SSTLGLDQIE PKWDSVSSYC KQHAVNRGPE QCRKRWSNLL CDFKKIKNWE LHRKDEDETF 120 WKMRNELRRE RRLPGFFDRE VYNLLDGRPF ATEAIPLRLI TVETEMKNAY GDEVAARLTA 180 AEKEEDEEAT VDGLFSDYKE LEQDEICWTS KKETVVAEDP RRTQPTSGNS ISSKHNQRTK 240 SWYIDIPERM EEEATIXXNL TDRLIKVFER NGNLLSAQLE ARNINLELDR HERKEQNASL 300 VGVLQKLTDG LIRIAEKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020540798.1	1e-173	trihelix transcription factor ASR3
TrEMBL	A0A067JI81	0.0	A0A067JI81_JATCU; Uncharacterized protein
STRING	cassava4.1_023178m	3e-96	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-75	Trihelix family protein