PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01415.10
Common NameLOC105642709, WRKY30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 506aa    MW: 54497.9 Da    PI: 7.8933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01415.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30265323259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Jcr4S01415.10 265 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILTTTYEGNHNHP 323
                    7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-33249325IPR003657WRKY domain
SuperFamilySSF1182902.35E-27257325IPR003657WRKY domain
PROSITE profilePS5081129.218259325IPR003657WRKY domain
SMARTSM007743.4E-36264324IPR003657WRKY domain
PfamPF031062.9E-26266323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEKQGRELKF LHSGDFLRQI PGVSDNLTDH SFAGQSRIKE VDFFSTDIST DKSSRDQEMK  60
DGSSPSALVD SGINTGLNLL ISSSGISETE NGNKSNNEMT RLQAELTRLH DENKKLKSML  120
DQITRSYKEL QAQLLMAMRK QAHGNRREQK GEMNGISGPI MSAQQFMDPR PSATLNVNDP  180
SVSDDKAETA SVSPTNTTTE AMSQINPGKQ ASTTEDALDQ TSQSWGSPKS PRLEQPKGEE  240
QVNDHVPFRK ARVSVRARSE APLITDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK  300
QVQRCAEDKT ILTTTYEGNH NHPLPPAAAA MANTTSAAAA MLLSGSTMSK EGLSSSNSFF  360
PSLPYASTMA TLSASAPFPT ITLDLTQSPN PTPFLRTPPT TTFPLPLHGY PQLLGHPMYV  420
SNNKLPAAAI PPVQLGQRHA SMVETVTAAI ASDPNFTAAL AAAISTIIGN QRSNDGTDSN  480
NNGPNGITGT PGSPQLPHSC TTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21251327176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852820.0KC485282.1 Jatropha curcas WRKY transcription factor (WRKY30) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083016.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLS5CKA70.0S5CKA7_JATCU; WRKY transcription factor 30.1
STRINGcassava4.1_021176m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.12e-67WRKY family protein
Publications ? help Back to Top
  1. Xiong W, et al.
    Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).
    Gene, 2013. 524(2): p. 124-32
    [PMID:23644253]