PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01414.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 469aa    MW: 52555.3 Da    PI: 8.6363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01414.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12368413454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++   Er+RRdri+ ++++Lr+l+Pk      +K++Ka++L  A++YI +L
  Jcr4S01414.70 368 KNLVTERNRRDRIRGGLFTLRSLVPKI-----TKMDKASTLGDAINYIVEL 413
                    55678*********************7.....7***************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-1888237IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.26E-11362425No hitNo description
SuperFamilySSF474597.98E-17363429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15366430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10367413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-13370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDMHERRVAI AKENIPLMIE LQLWVPFTAF EPFDGRFLGS DDDFLSAKRR RESCLYQSIC  60
YLMRQGQTER GLAVKIGDMR GLERAVELLR PFVDSKAWDC CVVWKLGDDP SRFIQWMGCC  120
CSGGGGGDGG KVKEERIDEN VGICRDLYFK HPIRTKACEA LACFPSFMPL YSGIHGEVVL  180
SKQSKWVTRV NASDSKFSHE SIGTRVLIPV SGGLIELFAG KHIPKDQKII EFITSQFNVL  240
KQEVMIAHGF TGLNELCLDP FLEQNMQNLP KPCQLLSLIP QAQVLHPLNQ TNTHSSFVVS  300
SSGSSPPNGL PSLDSHSSYL PQTVISKQSI GKRSAPRKSK KQAGLLPECN NKVAKVNQRS  360
ERDQFRSKNL VTERNRRDRI RGGLFTLRSL VPKITKMDKA STLGDAINYI VELEEEAKKL  420
QDELKETKAE ECKSSDAELL TLKSKALQDG SKNMQPPDNN QDFSGFGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085390.10.0transcription factor bHLH90 isoform X1
TrEMBLA0A067JRR70.0A0A067JRR7_JATCU; Uncharacterized protein
STRINGcassava4.1_031741m1e-169(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-62bHLH family protein