PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S01363.30 | ||||||||
Common Name | JCGZ_18327, LOC105642028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26825.3 Da PI: 6.2671 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.5 | 2.8e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ +q++ Jcr4S01363.30 4 SCNGCRVLRKGCSDDCTIRPCLqwiksPDSQANATLFLAKFYGRAGLINLIDAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAQCQAA 99 6*********************************************************************************************** PP DUF260 92 aelallke 99 ++++l+++ Jcr4S01363.30 100 VDAVLRGT 107 99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.181 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCT IRPCLQWIKS PDSQANATLF LAKFYGRAGL INLIDAGPQH 60 LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAQCQAAV DAVLRGTPIM QMPSAPDAPP 120 PHLIDPFKTY DIRHVSKDSS SVELNKVKNR TRFKRPINKP TSPSESIGRV NLGDLSFEQF 180 REPWSSQMAN GDSSKDDESM FSIETVEDVN RDREPNQNLN NSGSDDGDEV AGLELTLGLV 240 PVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082091.1 | 0.0 | LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 2e-84 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A067JZK2 | 1e-180 | A0A067JZK2_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014940m | 1e-145 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 7e-87 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642028 |
Publications ? help Back to Top | |||
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