PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01363.20
Common NameJCGZ_18326, LOC105642026
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 438aa    MW: 49381.3 Da    PI: 5.2384
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01363.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.31.8e-091659340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Jcr4S01363.20 16 ARACDSCIRKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 59
                   578*****************************657788888876 PP
2CCT67.63.4e-23383426144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Jcr4S01363.20 383 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 426
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0211461IPR000315B-box-type zinc finger
SMARTSM003361.2E-101461IPR000315B-box-type zinc finger
PfamPF006439.4E-81659IPR000315B-box-type zinc finger
CDDcd000212.36E-91761No hitNo description
PROSITE profilePS5101716.083383425IPR010402CCT domain
PfamPF062037.4E-18383425IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MISHKNVANA VGGKTARACD SCIRKRARWY CAADDAFLCQ ACDSSVHSAN SLARRHERVR  60
LKTASLKSLN LFSKESTSCV PSWHQGFTRK ARTPRHGKSV NFISKNEEKI RNHIPFVPEL  120
GSDETSNEEN DEEQLLYRVP IFDPFVAELC APTVSNEAET IIADRTVGDV NGVESKTPSL  180
GCDVGQSLHG CGIMPSDMDL AEFSADVESL LGRGLENESF GMEELGLMDC KEEEYSLGKV  240
KVEEEKEEEE EDDDDVRECQ VHTEIDMARE PPFEFSFDYD STTCGDDDEK VELKKNGELE  300
GDDDEKLNKK KKRKILLRLD YEAVITAWAS QGSPWITGNQ PDINPDDCWL DCMGIYGAEV  360
LHHSYGDHNG GIGIQPAMTD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG  420
RFVKRANFAA PVFPLHSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308313KKKKRK
2393409RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082090.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A067KAW60.0A0A067KAW6_JATCU; Uncharacterized protein
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-95B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]