PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01346.50

Common Name

JCGZ_11093, LOC105637188

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YC

Protein Properties

Length: 274aa MW: 30364.7 Da PI: 4.5969

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01346.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.5	7.4e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl +iv r Jcr4S01346.50 6 DTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYAITLKRGAKTLNSLHLKQCVQTFNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.1E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	9.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YAITLKRGAK 60 TLNSLHLKQC VQTFNVFDFL REIVSRVPDL GGSDTTGDDR VVAKRRKVAD DEDTDSEEEL 120 NQSIMHEAVH TSGSGRGRGR GRGRGRGRGS RAAQSGKFED EPDISHDEKP SPTIESLDDV 180 DELEDMKENI QGSRSPQAPV HDFDLNVGLD ENGESKTVLT ATPTNSTAKP TPKMKNELSG 240 WSLADIETMD VDPIHLANLN GRIDEDEEDY DEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075998.1	0.0	dr1-associated corepressor
TrEMBL	A0A067KHP6	0.0	A0A067KHP6_JATCU; Uncharacterized protein
STRING	XP_002523220.1	1e-123	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	8e-66	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Entrez Gene	105637188

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]