PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01345.10
Common NameJCGZ_11822, LOC105640721
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 250aa    MW: 29035.9 Da    PI: 9.9141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01345.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll  +++++G g W+t++++ g++R++k+c++rw++yl
    Jcr4S01345.10 14 KGAWTPAEDGLLRSCIQRHGEGKWHTVPSRAGLNRCRKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.71.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E +l ++++++lG++ W++Ia +++ gRt++++k++w++++
    Jcr4S01345.10  67 RGKFTLDEIDLMIKLHNLLGNR-WTLIAGRLP-GRTANDVKNFWNTHM 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.685161IPR017930Myb domain
SMARTSM007172.1E-121363IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2613108IPR009057Homeodomain-like
PfamPF002493.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-211568IPR009057Homeodomain-like
CDDcd001672.53E-81661No hitNo description
PROSITE profilePS5129423.05362116IPR017930Myb domain
SMARTSM007177.8E-1466114IPR001005SANT/Myb domain
PfamPF002497.8E-1467111IPR001005SANT/Myb domain
CDDcd001674.14E-969112No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2369116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPMERPIPVG VVRKGAWTPA EDGLLRSCIQ RHGEGKWHTV PSRAGLNRCR KSCRLRWLNY  60
LKPDIKRGKF TLDEIDLMIK LHNLLGNRWT LIAGRLPGRT ANDVKNFWNT HMRKKLKPSS  120
PYREEDNEKG KTVKIIKPRP RKLSKNISLF TATAKDKDHR QNDNGYDKAP TPVAFPPFDN  180
KIENQSNTTN PFAGESASTF SEGESSSKEN DWWSNFSFDE ENWNLFFNNE QELIFDRIEM  240
DMEVMGSQYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-20141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346960.0KM034696.1 Jatropha curcas clone JcMYB076 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080506.10.0transcription factor MYB114
SwissprotQ9FNV96e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A067K5D70.0A0A067K5D7_JATCU; Uncharacterized protein
STRINGVIT_14s0006g01290.t015e-67(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-58myb domain protein 113
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]