PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01332.10
Common NameJCGZ_09071, LOC105636295
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 552aa    MW: 60872.4 Da    PI: 8.2038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01332.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-1760106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
    Jcr4S01332.10  60 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 106
                      688*****************************.************986 PP
2Myb_DNA-binding59.76.3e-19112158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
    Jcr4S01332.10 112 KGPWTQEEDDKITELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 158
                      79******************************.*************97 PP
3Myb_DNA-binding569.1e-18164207146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
    Jcr4S01332.10 164 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 207
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.81955106IPR017930Myb domain
SMARTSM007171.2E-1459108IPR001005SANT/Myb domain
PfamPF002491.5E-1560106IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-1561116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-2262118IPR009057Homeodomain-like
CDDcd001671.02E-1263106No hitNo description
PROSITE profilePS5129431.539107162IPR017930Myb domain
SuperFamilySSF466891.42E-31109205IPR009057Homeodomain-like
SMARTSM007176.3E-18111160IPR001005SANT/Myb domain
PfamPF002494.0E-18112158IPR001005SANT/Myb domain
CDDcd001671.73E-15114158No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27119165IPR009057Homeodomain-like
SMARTSM007171.3E-16163211IPR001005SANT/Myb domain
PROSITE profilePS5129422.781163213IPR017930Myb domain
PfamPF002496.2E-16164207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23166213IPR009057Homeodomain-like
CDDcd001671.51E-12166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MDEVKIEECC LENKQLTAAS SSSLSEGSGS AILKSPGVSS PATASPTHNR RTTGPIRRAK  60
GGWTPEEDET LRNAVAAFKG KSWKKIAEFF PDRSEVQCLH RWQKVLNPDL VKGPWTQEED  120
DKITELVAKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP DIKKDAWTLE EELALMNAHR  180
IHGNKWAEIA KVLPGRTDNS IKNHWNSSLK KKLDFYLATG KLPPVVKSEI IFSSRKPSSV  240
AKNGIQNGND NIHRPTVTKT SKESDSTAQT SSGTTDVCKL EDVKDQLESS APRRDMAASS  300
SVLPNESADS EGVECKPQSF IADLSCCNSE SLRTCENCGI NCEIVEDKVI GSQYGCLYYK  360
PPQLETYTPL DLDPFVIHHL QREYSSSPMS SISFFTPPCV KSNYLNAQSP ESILRIAAKS  420
YPNTPSIFRK RKIGSQVHSV PSKIGKGGQE SVEDRLQRTE RTPEKIESQD GSSCYSPHPD  480
DNTIGCNGKA FNASPPYRLK SKRTAVFKSV ERQLEFTFEN DGCDGAKSVG LSAKGSSLVS  540
EDCSHATKMG VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68592135159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68592135159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346440.0KM034644.1 Jatropha curcas clone JcMYB024 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074934.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-172MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A067KKV60.0A0A067KKV6_JATCU; MYB family protein
STRINGXP_002532327.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-164myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]